2.2. cli

Command Line Interface for ENKIE.

2.2.1. Module Contents

cli.main(sbml_file, prefix, metabolites_namespace, reactions_namespace, compartment_params_file, clear_cache)

Estimates kinetic and thermodynamic parameters from the SBML_FILE model and saves the mean and covariance of the prediction in <PREFIX>_mean.csv and <PREFIX>_cov.csv. Additionally saves the association between per-enzyme reactions and genes in <PREFIX>_genes.csv.