2.1.2.6. enkie.metabolite

Basic description of a metabolite which is part of a metabolic model.

2.1.2.6.1. Module Contents

class enkie.metabolite.Metabolite(mid: str, miriam_id: str, compartment: str = 'c', nH: int = 0, z: int = 0)[source]

Bases: enkie.miriam_metabolite.MiriamMetabolite

A metabolite in a metabolic model.

Parameters:

  • mid (str) – Unique identifier of the metabolite as defined in the model.

  • miriam_id (str) – Identifier of the metabolite as defined on identifiers.org. Such ID has the format “<prefix>:<id>”, such as “bigg.metabolite:g6p” or “kegg.compound:C00009”. Ideally, only identifiers supported by MetaNetX should be used. Other identifiers will be treated as fictional.

  • compartment (str, optional) – The identifier of the compartment, by default ‘c’.

  • nH (int, optional) – Number of hydrogen atoms in the metabolite, by default 0.

  • z (int, optional) – Charge of the metabolite, by default 0.

property id: str[source]

Gets the unique identifier of the metabolite.